Basic Information
Locus ID:
gene:TRIDC3AG066320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase BRE1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 699621796 | 699633327 | + | gene:TRIDC3AG066320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 96,388.27 Da | 48.18 | 88.12 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16499 | RING-HC_BRE1_like | 791 | 831 | 1.66375E-20 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 791 | 830 | 1.5E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 791 | 836 | 2.75E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 773 | 844 | 7.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 792 | 830 | 1.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 792 | 830 | 10.836942 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 807 | 816 | - | IPR017907 |
| Coils | Coil | Coil | 369 | 403 | - | - |
| Coils | Coil | Coil | 291 | 311 | - | - |
| Coils | Coil | Coil | 666 | 686 | - | - |
| Coils | Coil | Coil | 205 | 239 | - | - |
| Coils | Coil | Coil | 722 | 789 | - | - |
| Coils | Coil | Coil | 483 | 503 | - | - |
| Coils | Coil | Coil | 10 | 37 | - | - |
| Coils | Coil | Coil | 424 | 454 | - | - |
| Coils | Coil | Coil | 331 | 358 | - | - |
| Coils | Coil | Coil | 568 | 595 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55250.5 | - | 0 |
| RefSeq | XP_037408248.1 | E3 ubiquitin-protein ligase BRE1-like 2 [Triticum dicoccoides] | 0 |
| A2ZAC2 | E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica OX=39946 GN=BRE1B PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6EQ31 | E3 ubiquitin protein ligase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG066320.