Basic Information
Locus ID:
gene:TRIDC3AG066090
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase BRE1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 698427176 | 698438658 | - | gene:TRIDC3AG066090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 99,344.43 Da | 52.23 | 87.53 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16499 | RING-HC_BRE1_like | 819 | 860 | 1.79624E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 820 | 862 | 3.9E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 820 | 865 | 3.73E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 802 | 873 | 2.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 821 | 859 | 2.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 821 | 859 | 10.77793 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 836 | 845 | - | IPR017907 |
| Coils | Coil | Coil | 39 | 66 | - | - |
| Coils | Coil | Coil | 398 | 432 | - | - |
| Coils | Coil | Coil | 597 | 624 | - | - |
| Coils | Coil | Coil | 505 | 539 | - | - |
| Coils | Coil | Coil | 320 | 340 | - | - |
| Coils | Coil | Coil | 453 | 483 | - | - |
| Coils | Coil | Coil | 360 | 387 | - | - |
| Coils | Coil | Coil | 730 | 818 | - | - |
| Coils | Coil | Coil | 234 | 268 | - | - |
| Coils | Coil | Coil | 695 | 715 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55250.5 | - | 0 |
| RefSeq | XP_037408237.1 | E3 ubiquitin-protein ligase BRE1-like 2 [Triticum dicoccoides] | 0 |
| A2ZAC2 | E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica OX=39946 GN=BRE1B PE=3 SV=2 | 0 | |
| TrEMBL | A0A3B6EQ31 | E3 ubiquitin protein ligase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG066090.