Basic Information
Locus ID:
gene:TRIDC3AG062890
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 682160430 | 682167554 | - | gene:TRIDC3AG062890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 86,546.86 Da | 40.33 | 78.58 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 496 | 699 | 1.19312E-39 | - |
| Pfam | PF00069 | Protein kinase domain | 39 | 294 | 1.1E-46 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 530 | 567 | 0.094 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 662 | 698 | 0.0021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 573 | 612 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 620 | 656 | 1.4E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 437 | 706 | 4.81E-49 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 22 | 293 | 2.02E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 127 | 310 | 1.8E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 5 | 108 | 3.3E-21 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 315 | 427 | 9.4E-6 | IPR013783 |
| Gene3D | G3DSA:2.130.10.10 | - | 440 | 718 | 1.8E-71 | IPR015943 |
| SMART | SM00320 | WD40_4 | 433 | 472 | 65.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 659 | 698 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 612 | 7.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 524 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 567 | 0.72 | IPR001680 |
| SMART | SM00220 | serkin_6 | 37 | 299 | 6.0E-41 | IPR000719 |
| SMART | SM00320 | WD40_4 | 615 | 656 | 2.1E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 622 | 665 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 666 | 698 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 622 | 658 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 579 | 621 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 299 | 37.276318 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 666 | 698 | 8.597424 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 579 | 615 | 10.864685 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 65 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 167 | 179 | - | IPR008271 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 643 | 657 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 685 | 699 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 599 | 613 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 643 | 657 | 3.7E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21410.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_037408086.1 | uncharacterized protein LOC119270210 isoform X3 [Triticum dicoccoides] | 0 |
| Q8S9L6 | Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EQ99 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG062890.