Basic Information
Locus ID:
gene:TRIDC3AG062230
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 678908094 | 678911179 | + | gene:TRIDC3AG062230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 25,758.29 Da | 65.12 | 55.37 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 178 | 219 | 4.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 224 | 2.21E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 225 | 9.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 219 | 7.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 219 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 156 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037408039.1 | E3 ubiquitin-protein ligase At3g02290-like [Triticum dicoccoides] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6ET17 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG062230.