Basic Information
Locus ID:
gene:TRIDC3AG060370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 665383857 | 665389214 | + | gene:TRIDC3AG060370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 36,784.15 Da | 47.82 | 73.20 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 270 | 307 | 5.7E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 266 | 320 | 2.87E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 322 | 1.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 270 | 307 | 9.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 270 | 308 | 12.371254 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 285 | 294 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_037407949.1 | probable histone acetyltransferase HAC-like 1 [Triticum dicoccoides] | 0 |
| Q6YXY2 | Probable histone acetyltransferase HAC-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0137500 PE=3 SV=2 | 0 | |
| TrEMBL | M8AEI7 | Putative histone acetyltransferase HAC-like 1 OS=Triticum urartu OX=4572 GN=TRIUR3_05974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG060370.