Basic Information
Locus ID:
gene:TRIDC3AG058880
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 653938355 | 653942372 | - | gene:TRIDC3AG058880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 50,497.93 Da | 53.27 | 63.13 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 425 | 469 | 1.74499E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 423 | 464 | 1.9E-8 | - |
| Pfam | PF07002 | Copine | 148 | 362 | 1.2E-72 | IPR010734 |
| SUPERFAMILY | SSF57850 | RING/U-box | 419 | 465 | 1.57E-6 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 125 | 307 | 6.23E-10 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 408 | 469 | 7.9E-12 | IPR013083 |
| SMART | SM00327 | VWA_4 | 123 | 326 | 4.1E-6 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 426 | 459 | 10.763177 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 0 |
| RefSeq | XP_037407840.1 | E3 ubiquitin-protein ligase RGLG2-like [Triticum dicoccoides] | 0 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7PXA0 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG058880.