Basic Information
Locus ID:
gene:TRIDC3AG058390
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 650555560 | 650559672 | + | gene:TRIDC3AG058390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 38,222.35 Da | 57.08 | 80.38 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 37 | 83 | 1.7E-8 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 221 | 239 | 0.15 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 242 | 254 | 1.5 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 132 | 275 | 7.32E-14 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 84 | 1.7E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 112 | 282 | 4.2E-22 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 36 | 79 | 2.3E-9 | - |
| SMART | SM00367 | LRR_CC_2 | 132 | 157 | 650.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 243 | 269 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 218 | 242 | 92.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 158 | 183 | 4.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 34 | 82 | 10.504256 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05460.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_037407819.1 | putative F-box/LRR-repeat protein 23 [Triticum dicoccoides] | 0 |
| Q9M0U9 | F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TZK8 | F-box domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG058390.