Basic Information
Locus ID:
gene:TRIDC3AG056190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 638373821 | 638380965 | + | gene:TRIDC3AG056190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 89,320.82 Da | 46.53 | 86.77 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 312 | 354 | 2.22706E-26 | - |
| Pfam | PF04564 | U-box domain | 309 | 378 | 1.9E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 452 | 741 | 1.12E-27 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 384 | 3.83E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 306 | 380 | 5.0E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 435 | 753 | 5.3E-33 | IPR011989 |
| SMART | SM00185 | arm_5 | 485 | 529 | 0.23 | IPR000225 |
| SMART | SM00185 | arm_5 | 531 | 569 | 34.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 570 | 616 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 662 | 703 | 320.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 311 | 374 | 6.0E-34 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 307 | 381 | 43.106861 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 496 | 542 | 9.1524 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 767 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27910.1 | plant U-box 45. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_037407659.1 | U-box domain-containing protein 45-like [Triticum dicoccoides] | 0 |
| Q9C7G1 | U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7U032 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG056190.