Basic Information
Locus ID:
gene:TRIDC3AG055750
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 635482797 | 635486160 | + | gene:TRIDC3AG055750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 28,608.61 Da | 51.01 | 92.83 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 152 | 198 | 6.6E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 198 | 3.53E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 222 | 4.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 192 | 2.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 193 | 12.017182 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 170 | 179 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24440.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037407637.1 | E3 ubiquitin-protein ligase AIRP2-like [Triticum dicoccoides] | 0 |
| Q9M022 | E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ELZ1 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG055750.