Basic Information
Locus ID:
gene:TRIDC3AG055480
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RIO1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 634291103 | 634295978 | + | gene:TRIDC3AG055480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 75,292.36 Da | 40.07 | 93.33 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13812 | Pentatricopeptide repeat domain | 293 | 352 | 7.8E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 234 | 260 | 0.02 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 149 | 175 | 0.013 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 508 | 614 | 2.0E-10 | IPR000719 |
| Pfam | PF01535 | PPR repeat | 414 | 443 | 0.05 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 384 | 407 | 0.89 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 467 | 627 | 1.24E-25 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 305 | 617 | 7.34E-6 | IPR011009 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 79 | 284 | 7.8E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 285 | 358 | 9.2E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 359 | 452 | 2.6E-9 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 559 | 676 | 4.3E-34 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 473 | 545 | 1.6E-25 | - |
| SMART | SM00220 | serkin_6 | 462 | 678 | 1.1E-4 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 413 | 445 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 149 | 180 | 2.8E-4 | IPR002885 |
| TIGRFAM | TIGR03724 | arch_bud32: Kae1-associated kinase Bud32 | 468 | 673 | 8.8E-57 | IPR022495 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 308 | 343 | 2.6E-6 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 462 | 679 | 14.266167 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 146 | 180 | 9.96388 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 305 | 341 | 9.492543 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 411 | 445 | 10.47906 | IPR002885 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 586 | 598 | - | IPR008266 |
| Coils | Coil | Coil | 677 | 679 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26110.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_037407618.1 | pentatricopeptide repeat-containing protein At5g61370, mitochondrial-like isoform X2 [Triticum dicoccoides] | 0 |
| Q9FLJ6 | Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453G2J0 | non-specific serine/threonine protein kinase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG055480.