HalophFGD

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Basic Information
Locus ID: gene:TRIDC3AG055130
Species & Taxonomic ID: Triticum dicoccoides & 85692
Genome Assembly: GCF_002162155.2
Description: Interconversion of serine and glycine
Maps and Mapping Data
Chromosome Start End Strand ID
3A 631245924 631249398 + gene:TRIDC3AG055130
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.89 63,662.05 Da 41.15 75.27 -0.38
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00378 SHMT 130 543 0.0 IPR001085
Pfam PF00464 Serine hydroxymethyltransferase 129 532 5.1E-170 IPR039429
SUPERFAMILY SSF53383 PLP-dependent transferases 119 584 5.13E-167 IPR015424
Gene3D G3DSA:3.40.640.10 - 158 437 4.9E-194 IPR015421
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 133 581 4.9E-194 IPR015422
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 457 473 8.570195 IPR001680
Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 128 582 39.768242 IPR001085
MobiDBLite mobidb-lite consensus disorder prediction 36 58 - -
MobiDBLite mobidb-lite consensus disorder prediction 94 114 - -
Gene Ontology
Biological Process:
GO:0019264 (glycine biosynthetic process from serine) GO:0035999 (tetrahydrofolate interconversion)
Molecular Function:
GO:0003824 (catalytic activity) GO:0004372 (glycine hydroxymethyltransferase activity) GO:0005515 (protein binding) GO:0030170 (pyridoxal phosphate binding)
KEGG Pathway
KO Term:
K00600 (glycine hydroxymethyltransferase [EC:2.1.2.1])
Pathway:
ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00460 (Cyanoamino acid metabolism) map00460 (Cyanoamino acid metabolism) ko00630 (Glyoxylate and dicarboxylate metabolism) map00630 (Glyoxylate and dicarboxylate metabolism) ko00670 (One carbon pool by folate) map00670 (One carbon pool by folate) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko01523 (Antifolate resistance) map01523 (Antifolate resistance)
Module:
M00140 (C1-unit interconversion, prokaryotes) M00141 (C1-unit interconversion, eukaryotes) M00346 (Formaldehyde assimilation, serine pathway) M00532 (Photorespiration)
Reaction:
R00945 (5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine) R09099 (L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G36370.1 serine hydroxymethyltransferase 7. Encodes a putative serine hydroxymethyltransferase. 0
RefSeq XP_037407590.1 serine hydroxymethyltransferase 7-like [Triticum dicoccoides] 0
Swiss-Prot Q84WV0 Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=1 SV=1 0
TrEMBL A0A3B6ER83 glycine hydroxymethyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 0
Expression
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BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC3AG055130.

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