Basic Information
Locus ID:
gene:TRIDC3AG054650
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 627541089 | 627543004 | + | gene:TRIDC3AG054650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 35,421.57 Da | 39.71 | 76.56 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 63 | 311 | 1.14523E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 190 | 224 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 181 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 231 | 268 | 0.0072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 100 | 138 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 313 | 8.88E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 312 | 6.7E-87 | IPR015943 |
| SMART | SM00320 | WD40_4 | 272 | 312 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 138 | 6.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 181 | 1.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 228 | 268 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 224 | 2.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 92 | 6.6E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 105 | 138 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 105 | 147 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 191 | 227 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 235 | 277 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 191 | 233 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 235 | 270 | 8.992876 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 148 | 183 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 148 | 183 | 11.176815 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 211 | 225 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 211 | 225 | 4.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 168 | 182 | 4.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 125 | 139 | 4.5E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29260.1 | peroxin 7. Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function. | 0 |
| RefSeq | XP_037407535.1 | peroxisome biogenesis protein 7-like [Triticum dicoccoides] | 0 |
| Q9XF57 | Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana OX=3702 GN=PEX7 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7PVG3 | Peroxin-7 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG054650.