Basic Information
Locus ID:
gene:TRIDC3AG054260
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the TUB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 624276066 | 624279486 | + | gene:TRIDC3AG054260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 49,947.53 Da | 60.34 | 71.87 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 58 | 111 | 1.1E-8 | IPR001810 |
| Pfam | PF01167 | Tub family | 122 | 444 | 1.2E-115 | IPR000007 |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 103 | 4.32E-7 | IPR036047 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 108 | 449 | 1.91E-99 | IPR025659 |
| Gene3D | G3DSA:1.20.1280.50 | - | 54 | 106 | 2.6E-5 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 117 | 443 | 1.3E-96 | IPR025659 |
| ProSitePatterns | PS01200 | Tub family signature 1. | 370 | 383 | - | IPR018066 |
| ProSitePatterns | PS01201 | Tub family signature 2. | 434 | 449 | - | IPR018066 |
| PRINTS | PR01573 | Tubby superfamily signature | 370 | 386 | 4.9E-76 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 175 | 191 | 4.9E-76 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 241 | 268 | 4.9E-76 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 191 | 215 | 4.9E-76 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 352 | 369 | 4.9E-76 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 427 | 449 | 4.9E-76 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 406 | 425 | 4.9E-76 | IPR000007 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25280.1 | tubby like protein 10. Member of TLP family | 0 |
| RefSeq | XP_037407502.1 | tubby-like F-box protein 3 [Triticum dicoccoides] | 0 |
| Q8LJA9 | Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EP02 | Tubby-like F-box protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG054260.