Basic Information
Locus ID:
gene:TRIDC3AG054040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 621972855 | 621974093 | - | gene:TRIDC3AG054040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 43,824.34 Da | 53.82 | 110.15 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 64 | 4.79104E-18 | - |
| Pfam | PF04564 | U-box domain | 9 | 88 | 6.0E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 88 | 1.36E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 118 | 378 | 1.12E-19 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 225 | 3.3E-6 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 229 | 392 | 5.2E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 93 | 2.8E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 12 | 85 | 1.4E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 92 | 33.296982 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 276 | 319 | 9.7474 | IPR000225 |
| Coils | Coil | Coil | 125 | 145 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037407488.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ELD9 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG054040.