Basic Information
Locus ID:
gene:TRIDC3AG053340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 617711829 | 617721492 | - | gene:TRIDC3AG053340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 133,719.67 Da | 43.70 | 72.62 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 832 | 1077 | 3.16E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 501 | 1064 | 3.6E-19 | IPR015943 |
| SMART | SM00384 | AT_hook_2 | 325 | 337 | 2.1 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 362 | 374 | 0.86 | IPR017956 |
| SMART | SM00320 | WD40_4 | 880 | 916 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 925 | 968 | 1.7 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 519 | 531 | 59.0 | IPR017956 |
| SMART | SM00320 | WD40_4 | 972 | 1011 | 39.0 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 426 | 438 | 15.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 264 | 276 | 0.51 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 229 | 241 | 110.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 206 | 218 | 15.0 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 424 | 434 | 3.5E-9 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 325 | 335 | 3.5E-9 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 360 | 371 | 3.5E-9 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1162 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19485.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037407442.1 | uncharacterized protein LOC119269654 isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6ELK5 | General transcription factor 3C polypeptide 2 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG053340.