Basic Information
Locus ID:
gene:TRIDC3AG053330
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 617708585 | 617711728 | + | gene:TRIDC3AG053330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 55,069.09 Da | 59.12 | 67.85 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 377 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 259 | 4.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 428 | 464 | 2.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 81 | 471 | 2.56E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 313 | 467 | 1.9E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 44 | 306 | 2.0E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 175 | 216 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 464 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 113 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 259 | 7.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.0046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 172 | 0.05 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 345 | 381 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 181 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 432 | 473 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 432 | 464 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 386 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 261 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 261 | 10.416506 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 364 | 378 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 246 | 260 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 246 | 260 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 364 | 378 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 2.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27840.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity. | 0 |
| RefSeq | XP_044358567.1 | uncharacterized protein LOC123079817 isoform X2 [Triticum aestivum] | 0 |
| Q93ZG3 | WD repeat-containing protein ATCSA-1 OS=Arabidopsis thaliana OX=3702 GN=ATCSA-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453FYT2 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG053330.