Basic Information
Locus ID:
gene:TRIDC3AG053120
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
HUB1
Description:
E3 ubiquitin-protein ligase BRE1-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 616869248 | 616880372 | - | gene:TRIDC3AG053120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 100,016.15 Da | 50.96 | 84.96 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16499 | RING-HC_BRE1_like | 823 | 864 | 4.69787E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 824 | 864 | 6.7E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 818 | 876 | 7.66E-14 | - |
| SUPERFAMILY | SSF57997 | Tropomyosin | 575 | 792 | 1.44E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 807 | 877 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 825 | 863 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 825 | 863 | 11.66311 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 840 | 849 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 593 | 620 | - | - |
| Coils | Coil | Coil | 635 | 655 | - | - |
| Coils | Coil | Coil | 363 | 383 | - | - |
| Coils | Coil | Coil | 782 | 802 | - | - |
| Coils | Coil | Coil | 237 | 271 | - | - |
| Coils | Coil | Coil | 209 | 229 | - | - |
| Coils | Coil | Coil | 691 | 725 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44950.1 | histone mono-ubiquitination 1. The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. | 0 |
| RefSeq | XP_037407403.1 | E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Triticum dicoccoides] | 0 |
| A2XW69 | E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=BRE1A PE=3 SV=2 | 0 | |
| TrEMBL | A0A8R7TYH1 | E3 ubiquitin protein ligase OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG053120.