Basic Information
Locus ID:
gene:TRIDC3AG050920
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
CTLH/CRA C-terminal to LisH motif domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 597785236 | 597788393 | - | gene:TRIDC3AG050920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 43,816.02 Da | 57.35 | 86.75 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16652 | dRing_Rmd5p_like | 329 | 377 | 1.26519E-28 | IPR037683 |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 152 | 293 | 2.6E-33 | IPR024964 |
| Pfam | PF13445 | RING-type zinc-finger | 331 | 372 | 3.0E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 326 | 380 | 1.27E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 388 | 7.6E-7 | IPR013083 |
| SMART | SM00757 | toby_final6 | 205 | 299 | 9.6E-26 | IPR013144 |
| SMART | SM00668 | ctlh | 152 | 209 | 8.2E-11 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 152 | 209 | 12.245893 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 117 | 145 | 7.830596 | IPR006594 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 331 | 374 | 14.028505 | IPR044063 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37880.1 | LisH/CRA/RING-U-box domains-containing protein. | 0 |
| RefSeq | XP_037407242.1 | protein RMD5 homolog [Triticum dicoccoides] | 0 |
| Q9T075 | Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ELV3 | Protein RMD5 homolog A-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG050920.