Basic Information
Locus ID:
gene:TRIDC3AG049850
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 590890565 | 590892643 | - | gene:TRIDC3AG049850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 73,610.72 Da | 47.40 | 99.84 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 290 | 332 | 3.32538E-24 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 419 | 457 | 3.2E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 287 | 356 | 9.7E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 359 | 4.14E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 389 | 656 | 1.4E-26 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 360 | 670 | 7.0E-29 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 286 | 359 | 2.4E-27 | IPR013083 |
| SMART | SM00185 | arm_5 | 418 | 458 | 1.7E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 503 | 543 | 140.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 289 | 352 | 2.0E-30 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 429 | 471 | 13.1424 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 285 | 359 | 41.930386 | IPR003613 |
| Coils | Coil | Coil | 195 | 215 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01830.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037407155.1 | U-box domain-containing protein 16-like [Triticum dicoccoides] | 0 |
| Q9LZW3 | U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EMX1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG049850.