Basic Information
Locus ID:
gene:TRIDC3AG049660
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 589771535 | 589788953 | - | gene:TRIDC3AG049660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 40,625.24 Da | 43.34 | 80.95 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 3 | 28 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 360 | 0.023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 361 | 9.16E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 379 | 7.6E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 133 | 8.7E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 322 | 361 | 3.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 31 | 73 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 28 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 273 | 150.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 329 | 362 | 9.045603 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 329 | 362 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 37 | 11.176815 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 348 | 362 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29860.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development. | 0 |
| RefSeq | XP_037407146.1 | protein DECREASED SIZE EXCLUSION LIMIT 1-like [Triticum dicoccoides] | 0 |
| F1DLK1 | Protein DECREASED SIZE EXCLUSION LIMIT 1 OS=Nicotiana benthamiana OX=4100 GN=DSE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EMV6 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG049660.