Basic Information
Locus ID:
gene:TRIDC3AG046170
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 562355479 | 562364103 | + | gene:TRIDC3AG046170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 107,715.42 Da | 43.03 | 82.32 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 135 | 386 | 4.03722E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 296 | 1.0E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 338 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 212 | 1.1E-4 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 820 | 976 | 1.1E-44 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 254 | 1.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 131 | 397 | 9.16E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 297 | 421 | 6.6E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 97 | 296 | 8.0E-49 | IPR015943 |
| SMART | SM00320 | WD40_4 | 299 | 338 | 6.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 254 | 1.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 170 | 0.0072 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 2.6E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 379 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.788527 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 222 | 263 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 214 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 306 | 341 | 12.314676 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 137 | 179 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 347 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 301 | 14.054668 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 222 | 256 | 12.288313 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 137 | 169 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 305 | 18.161219 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 325 | 339 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 325 | 339 | 2.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 241 | 255 | 2.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 283 | 297 | 2.6E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 126 | 980 | 19.340065 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 509 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_037406896.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1-like isoform X1 [Triticum dicoccoides] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453FP23 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG046170.