Basic Information
Locus ID:
gene:TRIDC3AG046140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 561585940 | 561595705 | - | gene:TRIDC3AG046140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 140,257.34 Da | 52.88 | 70.10 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 545 | 866 | 1.05768E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1115 | 1224 | 7.34159E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1114 | 1214 | 1.1E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 562 | 944 | 5.2E-67 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 980 | 1017 | 4.3E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 875 | 1270 | 2.34E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 528 | 866 | 4.48E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 979 | 1023 | 1.43E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 518 | 606 | 1.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 974 | 1031 | 1.0E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 731 | 867 | 9.7E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 881 | 1271 | 4.8E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 628 | 726 | 6.3E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1131 | 1214 | 6.2E-18 | IPR001650 |
| SMART | SM00184 | ring_2 | 980 | 1018 | 1.5E-6 | IPR001841 |
| SMART | SM00487 | ultradead3 | 541 | 836 | 4.4E-27 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 618 | 828 | 13.269253 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1106 | 1267 | 14.069201 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 980 | 1019 | 10.836942 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 995 | 1004 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 398 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_037406891.1 | helicase-like transcription factor CHR28 isoform X1 [Triticum dicoccoides] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EJM3 | DNA helicase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG046140.