Basic Information
Locus ID:
gene:TRIDC3AG045230
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 550785721 | 550806396 | - | gene:TRIDC3AG045230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 128,586.88 Da | 43.77 | 79.10 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 196 | 522 | 4.64245E-160 | - |
| CDD | cd00121 | MATH | 55 | 178 | 1.57517E-35 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 621 | 864 | 2.1E-74 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 517 | 1.3E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 876 | 1080 | 1.5E-49 | IPR029346 |
| Pfam | PF00917 | MATH domain | 61 | 180 | 1.0E-16 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 53 | 186 | 1.5E-36 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 544 | 1.71E-95 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 195 | 521 | 1.3E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 790 | 889 | 3.1E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 676 | 789 | 2.1E-39 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 194 | 2.1E-48 | IPR008974 |
| SMART | SM00061 | math_3 | 58 | 159 | 1.0E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 520 | 39.688412 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 35.604797 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 536 | 556 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_037406818.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X3 [Triticum dicoccoides] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EJT6 | ubiquitinyl hydrolase 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG045230.