Basic Information
Locus ID:
gene:TRIDC3AG042640
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 524243398 | 524249069 | + | gene:TRIDC3AG042640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 34,077.74 Da | 43.96 | 67.60 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 194 | 237 | 5.1E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 242 | 298 | 1.2E-19 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 58 | 139 | 3.0E-19 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 242 | 2.67E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 130 | 188 | 4.32E-16 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 55 | 129 | 1.03E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 266 | 1.8E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 267 | 300 | 4.6E-17 | - |
| SMART | SM00184 | ring_2 | 195 | 237 | 8.8E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 129 | 194 | 31.95915 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 195 | 238 | 12.031935 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 51 | 127 | 25.229208 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_044976900.1 | probable E3 ubiquitin-protein ligase RZFP34 [Hordeum vulgare subsp. vulgare] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XFH6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG042640.