Basic Information
Locus ID:
gene:TRIDC3AG042090
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 520763009 | 520768839 | - | gene:TRIDC3AG042090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 73,582.19 Da | 48.88 | 80.02 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 550 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 434 | 466 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 121 | 2.41E-11 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 341 | 653 | 6.2E-53 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 16 | 125 | 9.6E-17 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 655 | 1.4E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 508 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 373 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 550 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 423 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 466 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 653 | 4.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 432 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 433 | 468 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 559 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 113 | 8.584298 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 433 | 475 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 519 | 555 | 10.442869 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 537 | 551 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 410 | 424 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 453 | 467 | 1.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 537 | 551 | 1.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 410 | 424 | 1.7E-7 | IPR020472 |
| Coils | Coil | Coil | 116 | 146 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_037406580.1 | protein SPA1-RELATED 4-like isoform X1 [Triticum dicoccoides] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7PVE1 | Protein kinase domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG042090.