Basic Information
Locus ID:
gene:TRIDC3AG040620
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Homeobox KN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 509354632 | 509361085 | + | gene:TRIDC3AG040620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 91,587.77 Da | 56.93 | 58.94 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00086 | homeodomain | 594 | 647 | 1.28826E-10 | IPR001356 |
| CDD | cd15504 | PHD_PRHA_like | 241 | 293 | 1.81857E-26 | - |
| Pfam | PF00046 | Homeodomain | 604 | 643 | 7.6E-8 | IPR001356 |
| Pfam | PF00628 | PHD-finger | 241 | 296 | 1.3E-11 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 231 | 299 | 4.21E-14 | IPR011011 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 597 | 648 | 1.97E-10 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 596 | 661 | 7.2E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 298 | 2.3E-13 | IPR013083 |
| SMART | SM00389 | HOX_1 | 592 | 653 | 6.4E-11 | IPR001356 |
| SMART | SM00249 | PHD_3 | 241 | 294 | 2.5E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 239 | 296 | 11.0208 | IPR019787 |
| ProSiteProfiles | PS50071 | 'Homeobox' domain profile. | 589 | 649 | 13.102421 | IPR001356 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 242 | 293 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 813 | - | - |
| Coils | Coil | Coil | 194 | 214 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19510.1 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain. Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains. | 0 |
| RefSeq | XP_048564304.1 | homeobox protein HAZ1-like [Triticum urartu] | 0 |
| Q8H991 | Homeobox protein HAZ1 OS=Oryza sativa subsp. japonica OX=39947 GN=HAZ1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EI12 | Homeobox protein HOX1A OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG040620.