Basic Information
Locus ID:
gene:TRIDC3AG039410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Guanine nucleotide-binding protein subunit beta-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 494875037 | 494877058 | - | gene:TRIDC3AG039410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 36,164.21 Da | 39.60 | 84.22 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 12 | 324 | 3.39187E-85 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 275 | 2.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 201 | 235 | 3.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 107 | 143 | 3.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 160 | 193 | 6.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 13 | 47 | 3.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 65 | 101 | 3.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 323 | 7.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 324 | 2.24E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 328 | 1.6E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 7 | 47 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 62 | 101 | 5.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 324 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 193 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 235 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 275 | 0.0023 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 14 | 50 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 69 | 110 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 203 | 244 | 15.186998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 196 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 111 | 143 | 12.209223 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 203 | 240 | 11.418318 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 196 | 10.917412 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 69 | 105 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 111 | 143 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 14 | 50 | 11.377324 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 222 | 236 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 180 | 194 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 88 | 102 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 34 | 48 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 88 | 102 | 2.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 130 | 144 | 2.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 2.5E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18130.1 | receptor for activated C kinase 1C. Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B. | 0 |
| RefSeq | XP_037406382.1 | guanine nucleotide-binding protein subunit beta-like protein A [Triticum dicoccoides] | 0 |
| P49027 | Small ribosomal subunit protein RACK1z OS=Oryza sativa subsp. japonica OX=39947 GN=RACK1A PE=1 SV=1 | 0 | |
| TrEMBL | W5D4F5 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF007900030CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG039410.