Basic Information
Locus ID:
gene:TRIDC3AG039180
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 492565299 | 492729330 | + | gene:TRIDC3AG039180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 132,146.73 Da | 46.34 | 76.06 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 2 | 96 | 1.48367E-23 | - |
| CDD | cd12108 | Hr-like | 227 | 355 | 9.05808E-20 | - |
| CDD | cd12108 | Hr-like | 578 | 737 | 7.8845E-28 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1048 | 1091 | 1.38029E-17 | - |
| Pfam | PF05495 | CHY zinc finger | 920 | 995 | 4.0E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1096 | 1153 | 6.5E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 2 | 98 | 6.3E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 576 | 738 | 9.4E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 224 | 356 | 2.5E-7 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 912 | 976 | 1.02E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 986 | 1041 | 3.01E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1047 | 1094 | 2.56E-7 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1120 | 1161 | 5.7E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 573 | 801 | 4.5E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 226 | 373 | 1.2E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1044 | 1092 | 2.1E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 1 | 116 | 4.4E-25 | - |
| SMART | SM00184 | ring_2 | 1049 | 1090 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 913 | 982 | 25.740093 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 985 | 1048 | 29.816021 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1049 | 1090 | 11.235273 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 832 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_037406375.1 | zinc finger protein BRUTUS-like [Triticum dicoccoides] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EJS9 | CHY-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG039180.