Basic Information
Locus ID:
gene:TRIDC3AG038860
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 489112383 | 489113520 | + | gene:TRIDC3AG038860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 29,878.42 Da | 76.72 | 57.08 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 226 | 263 | 4.69197E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 225 | 269 | 8.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 270 | 1.04E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 274 | 4.9E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 226 | 263 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 226 | 264 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| Coils | Coil | Coil | 174 | 194 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_037406343.1 | zinc finger CCCH domain-containing protein 15-like [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6ELK1 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG038860.