Basic Information
Locus ID:
gene:TRIDC3AG034250-84604
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 436330663 | 436336339 | + | gene:TRIDC3AG034250-84604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 34,527.39 Da | 40.94 | 69.62 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 22 | 48 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 92 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 103 | 135 | 2.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 307 | 2.14E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 316 | 7.2E-99 | IPR015943 |
| SMART | SM00320 | WD40_4 | 7 | 49 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 135 | 6.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 174 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 267 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 93 | 6.2E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 22 | 51 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 61 | 92 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 103 | 144 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 103 | 137 | 12.341042 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 61 | 102 | 10.508451 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 122 | 136 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 80 | 94 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 36 | 50 | 1.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80670.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_044340653.1 | protein RAE1-like [Triticum aestivum] | 0 |
| Q38942 | Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2 | 0 | |
| TrEMBL | M8BH30 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG034250-84604.