Basic Information
Locus ID:
gene:TRIDC3AG034250-84053
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 436330617 | 436336126 | + | gene:TRIDC3AG034250-84053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 37,382.69 Da | 37.06 | 65.32 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 29 | 54 | 0.0035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 141 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 69 | 98 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 307 | 5.78E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 342 | 7.5E-110 | IPR015943 |
| SMART | SM00320 | WD40_4 | 146 | 180 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 273 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 61 | 99 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 16 | 55 | 0.002 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 141 | 6.2E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 109 | 143 | 12.341042 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 67 | 108 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 28 | 57 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 109 | 150 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 67 | 98 | 8.544697 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 86 | 100 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 42 | 56 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 128 | 142 | 1.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80670.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_044340653.1 | protein RAE1-like [Triticum aestivum] | 0 |
| Q38942 | Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6EGE2 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG034250-84053.