Basic Information
Locus ID:
gene:TRIDC3AG032480
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 404313333 | 404328620 | - | gene:TRIDC3AG032480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 77,793.32 Da | 50.70 | 73.40 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 439 | 727 | 8.86581E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 469 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 556 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 605 | 640 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 512 | 1.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 436 | 727 | 1.56E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 589 | 7.4E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 420 | 516 | 1.8E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 590 | 727 | 4.8E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 646 | 685 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 4.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 640 | 9.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 512 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 688 | 727 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 470 | 1.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 695 | 727 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 561 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 565 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 695 | 727 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 515 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 521 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 438 | 469 | 9.205141 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 499 | 513 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 291 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_037405852.1 | transcriptional corepressor LEUNIG-like [Triticum dicoccoides] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6EI17 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG032480.