Basic Information
Locus ID:
gene:TRIDC3AG032470
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 403815644 | 403830806 | - | gene:TRIDC3AG032470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 95,782.41 Da | 56.84 | 64.53 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 585 | 873 | 5.83183E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 751 | 786 | 3.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 590 | 615 | 8.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 622 | 658 | 6.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 666 | 702 | 2.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 584 | 873 | 4.35E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 714 | 873 | 1.9E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 564 | 713 | 1.8E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 619 | 658 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 833 | 873 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 705 | 744 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 662 | 702 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 748 | 786 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 792 | 831 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 616 | 2.9E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 841 | 873 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 841 | 873 | 10.100143 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 626 | 661 | 11.602863 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 669 | 707 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 669 | 711 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 584 | 615 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 626 | 667 | 14.351543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 645 | 659 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 499 | - | - |
| Coils | Coil | Coil | 95 | 136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_037405848.1 | transcriptional corepressor LEUNIG-like isoform X5 [Triticum dicoccoides] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6EJX3 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG032470.