Basic Information
Locus ID:
gene:TRIDC3AG029450
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 343386538 | 343411687 | - | gene:TRIDC3AG029450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 267,572.41 Da | 42.06 | 87.56 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12234 | RAVE protein 1 C terminal | 748 | 1375 | 2.7E-82 | IPR022033 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2348 | 2382 | 2.5E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 447 | 827 | 1.46E-14 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 75 | 563 | 2.11E-10 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2145 | 2442 | 1.04E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 418 | 894 | 9.1E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2139 | 2426 | 1.6E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 684 | 718 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 259 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 486 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2185 | 2220 | 0.97 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 110 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2394 | 2440 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2276 | 2322 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2131 | 2168 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2342 | 2382 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 734 | 777 | 9.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2350 | 2391 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2350 | 2387 | 11.312864 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1939 | 1954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1939 | 1958 | - | - |
| Coils | Coil | Coil | 1255 | 1275 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037405592.1 | uncharacterized protein LOC119268162 [Triticum dicoccoides] | 0 |
| Q6PNC0 | DmX-like protein 1 OS=Mus musculus OX=10090 GN=Dmxl1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EJB1 | Rav1p_C domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG029450.