Basic Information
Locus ID:
gene:TRIDC3AG029400
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
UBP6
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 342113179 | 342122238 | + | gene:TRIDC3AG029400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 53,024.37 Da | 49.18 | 83.04 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02657 | Peptidase_C19A | 100 | 454 | 3.33097E-143 | - |
| CDD | cd16104 | Ubl_USP14_like | 1 | 70 | 1.37238E-42 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 100 | 448 | 1.2E-46 | IPR001394 |
| Pfam | PF00240 | Ubiquitin family | 12 | 67 | 1.3E-6 | IPR000626 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 98 | 457 | 3.92E-80 | IPR038765 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 7.6E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 68 | 5.8E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 92 | 467 | 3.5E-90 | - |
| SMART | SM00213 | ubq_7 | 1 | 68 | 2.0E-8 | IPR000626 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 99 | 473 | 33.479866 | IPR028889 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 11 | 66 | 11.59461 | IPR000626 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 100 | 115 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 402 | 420 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51710.1 | ubiquitin-specific protease 6. Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. | 0 |
| RefSeq | XP_037405590.1 | ubiquitin carboxyl-terminal hydrolase 6-like [Triticum dicoccoides] | 0 |
| Q949Y0 | Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana OX=3702 GN=UBP6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EG32 | Ubiquitin carboxyl-terminal hydrolase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG029400.