Basic Information
Locus ID:
gene:TRIDC3AG028410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Suppressor of mec-8 and unc-52 protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 304020791 | 304045062 | - | gene:TRIDC3AG028410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 58,326.93 Da | 42.68 | 78.26 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 223 | 516 | 1.02903E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 295 | 4.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 337 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 246 | 2.5E-5 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 12 | 41 | 1.4E-16 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 381 | 2.7E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 216 | 516 | 6.8E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 195 | 517 | 1.2E-72 | IPR015943 |
| SMART | SM00667 | Lish | 11 | 43 | 0.001 | IPR006594 |
| SMART | SM00320 | WD40_4 | 384 | 430 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 516 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 2.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 339 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 474 | 21.0 | IPR001680 |
| SMART | SM00668 | ctlh | 45 | 97 | 3.1E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 1.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 348 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 349 | 390 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 301 | 12.499222 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 45 | 97 | 10.038321 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 11 | 43 | 9.516169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 484 | 517 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 484 | 517 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 349 | 384 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 255 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 305 | 16.323217 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 368 | 382 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 283 | 297 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 233 | 247 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 368 | 382 | 3.9E-6 | IPR020472 |
| Coils | Coil | Coil | 75 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73720.1 | transducin family protein / WD-40 repeat family protein. Encodes SMU1, a protein involved in RNA splicing. | 0 |
| RefSeq | XP_037405514.1 | suppressor of mec-8 and unc-52 protein homolog 1-like isoform X1 [Triticum dicoccoides] | 0 |
| Q8W117 | Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SMU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EJ37 | WD40 repeat-containing protein SMU1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG028410.