Basic Information
Locus ID:
gene:TRIDC3AG024050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 197390051 | 197401453 | - | gene:TRIDC3AG024050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 125,716.20 Da | 43.03 | 79.41 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 483 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 921 | 952 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 663 | 6.06E-42 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 487 | 1101 | 1.02E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 325 | 536 | 2.2E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 537 | 676 | 2.6E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 968 | 1106 | 3.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 749 | 967 | 4.7E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.0042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1045 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 436 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 2.7E-4 | IPR001680 |
| SMART | SM00667 | Lish | 13 | 45 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 88.0 | IPR001680 |
| SMART | SM00668 | ctlh | 43 | 101 | 7.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 871 | 911 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 868 | 83.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 619 | 0.91 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1057 | 1100 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 952 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 597 | 628 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 952 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 484 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 43 | 101 | 13.415294 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 449 | 484 | 8.676514 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 13 | 45 | 10.212169 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 606 | 620 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1139 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_037405176.1 | protein TPR1-like [Triticum dicoccoides] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EEA1 | Topless-related protein 2 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG024050.