Basic Information
Locus ID:
gene:TRIDC3AG021970
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Sof1-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 167199138 | 167207624 | + | gene:TRIDC3AG021970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 52,417.40 Da | 44.77 | 72.16 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04158 | Sof1-like domain | 363 | 448 | 7.6E-29 | IPR007287 |
| Pfam | PF00400 | WD domain, G-beta repeat | 62 | 95 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 137 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 319 | 0.062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 362 | 1.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 57 | 362 | 6.78E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 140 | 277 | 2.2E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 284 | 388 | 1.7E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 139 | 9.0E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 321 | 362 | 6.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 95 | 0.003 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 232 | 6.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 137 | 1.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 362 | 8.808332 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 105 | 137 | 10.284687 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 96 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 104 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 371 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 105 | 137 | 12.346452 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 82 | 96 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 349 | 363 | 7.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 82 | 96 | 7.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 306 | 320 | 7.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 454 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28450.1 | nucleotide binding;protein binding. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_037405071.1 | DDB1- and CUL4-associated factor 13-like [Triticum dicoccoides] | 0 |
| Q7ZYQ6 | DDB1- and CUL4-associated factor 13 OS=Xenopus laevis OX=8355 GN=dcaf13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EDI9 | DDB1- and CUL4-associated factor 13 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG021970.