Basic Information
Locus ID:
gene:TRIDC3AG020830
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 152369402 | 152377332 | - | gene:TRIDC3AG020830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 148,907.11 Da | 46.70 | 91.55 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 418 | 460 | 7.58688E-20 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 1140 | 1170 | 9.2E-4 | IPR001680 |
| Pfam | PF04564 | U-box domain | 415 | 484 | 2.4E-13 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 597 | 1067 | 2.59E-9 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 410 | 485 | 2.42E-21 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1102 | 1382 | 9.39E-37 | IPR036322 |
| Gene3D | G3DSA:1.25.10.10 | - | 590 | 913 | 9.5E-6 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 1203 | 1383 | 1.1E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1072 | 1202 | 1.2E-14 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 399 | 489 | 4.8E-23 | IPR013083 |
| SMART | SM00320 | WD40_4 | 1340 | 1381 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1089 | 1127 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1259 | 1298 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1301 | 1337 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1213 | 1249 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1132 | 1171 | 2.4E-5 | IPR001680 |
| SMART | SM00504 | Ubox_2 | 417 | 481 | 3.1E-23 | IPR003613 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1139 | 1175 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1356 | 1383 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1139 | 1175 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1349 | 1383 | 9.282875 | - |
| ProSiteProfiles | PS51698 | U-box domain profile. | 413 | 488 | 36.472588 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 363 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06880.2 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037405011.1 | putative E3 ubiquitin-protein ligase LIN [Triticum dicoccoides] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6EHC5 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG020830.