Basic Information
Locus ID:
gene:TRIDC3AG015340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 94261910 | 94272937 | - | gene:TRIDC3AG015340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 97,355.78 Da | 54.80 | 67.78 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 604 | 885 | 3.52486E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 853 | 885 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 765 | 801 | 7.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 643 | 677 | 0.0045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 684 | 721 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 608 | 635 | 7.5E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 17 | 41 | 1.8E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 598 | 885 | 2.12E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 737 | 885 | 4.7E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 570 | 736 | 2.8E-36 | IPR015943 |
| SMART | SM00667 | Lish | 13 | 45 | 3.9E-6 | IPR006594 |
| SMART | SM00320 | WD40_4 | 847 | 885 | 0.002 | IPR001680 |
| SMART | SM00320 | WD40_4 | 596 | 635 | 3.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 681 | 721 | 4.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 724 | 760 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 806 | 845 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 677 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 763 | 801 | 4.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 645 | 680 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 688 | 730 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 645 | 686 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 688 | 726 | 9.968326 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 854 | 885 | 9.757418 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 603 | 644 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 603 | 638 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 854 | 885 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 13 | 45 | 10.617241 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 770 | 810 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 770 | 806 | 8.544697 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 622 | 636 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 664 | 678 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 872 | 885 | 6.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 664 | 678 | 6.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 622 | 636 | 6.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 515 | - | - |
| Coils | Coil | Coil | 114 | 136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_037404611.1 | transcriptional corepressor LEUNIG-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6EED5 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG015340.