Basic Information
Locus ID:
gene:TRIDC3AG013470
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 71202756 | 71207079 | - | gene:TRIDC3AG013470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 32,785.50 Da | 35.20 | 88.19 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 164 | 198 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 159 | 9.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 13 | 38 | 0.0094 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 292 | 3.2E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 63 | 9.2E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 64 | 300 | 4.4E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 250 | 289 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 199 | 5.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 159 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 78 | 115 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 38 | 2.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 168 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 6 | 47 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 162 | 10.442869 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 146 | 160 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 146 | 160 | 2.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 25 | 39 | 2.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 186 | 200 | 2.8E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037404489.1 | zinc finger CCCH domain-containing protein 17-like [Triticum dicoccoides] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6EFP1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG013470.