Basic Information
Locus ID:
gene:TRIDC3AG011470
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 56400943 | 56404581 | - | gene:TRIDC3AG011470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 56,945.49 Da | 56.56 | 86.28 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16532 | RING-HC_RNFT1_like | 454 | 493 | 2.21831E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 453 | 496 | 2.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 447 | 498 | 7.29E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 432 | 503 | 5.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 455 | 492 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 455 | 493 | 13.521988 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 470 | 479 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 124 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01960.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044338840.1 | RING finger and transmembrane domain-containing protein 2-like [Triticum aestivum] | 0 |
| Q96EX2 | E3 ubiquitin-protein ligase RNFT2 OS=Homo sapiens OX=9606 GN=RNFT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7TRW0 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG011470.