Basic Information
Locus ID:
gene:TRIDC3AG009360
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 47304812 | 47309218 | - | gene:TRIDC3AG009360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 41,788.04 Da | 60.21 | 71.54 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13424 | Tetratricopeptide repeat | 306 | 380 | 5.4E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 161 | 206 | 3.79E-9 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 258 | 381 | 1.06E-7 | IPR011990 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 245 | 6.8E-11 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 246 | 388 | 7.0E-11 | IPR011990 |
| SMART | SM00184 | ring_2 | 167 | 201 | 4.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 201 | 11.707369 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 183 | 192 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 67 | - | - |
| Coils | Coil | Coil | 283 | 303 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54360.1 | zinc ion binding. | 0 |
| RefSeq | XP_044338688.1 | protein NCA1-like [Triticum aestivum] | 0 |
| Q9M2V1 | Protein NCA1 OS=Arabidopsis thaliana OX=3702 GN=NCA1 PE=1 SV=1 | 0 | |
| TrEMBL | M8AEQ9 | E3 ubiquitin-protein ligase CHFR OS=Triticum urartu OX=4572 GN=TRIUR3_16903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG009360.