Basic Information
Locus ID:
gene:TRIDC3AG008660
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Putative zinc finger in N-recognin (UBR box)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 42145852 | 42156914 | + | gene:TRIDC3AG008660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 228,963.77 Da | 51.20 | 86.02 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16482 | RING-H2_UBR1_like | 1420 | 1480 | 6.65222E-23 | - |
| Pfam | PF02207 | Putative zinc finger in N-recognin (UBR box) | 113 | 179 | 6.1E-19 | IPR003126 |
| Pfam | PF18995 | Proteolysis_6 C-terminal | 1563 | 2029 | 7.0E-95 | IPR044046 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 867 | 952 | 2.26E-5 | IPR036390 |
| Gene3D | G3DSA:2.10.110.30 | - | 113 | 181 | 2.9E-23 | - |
| Gene3D | G3DSA:1.10.10.2670 | - | 861 | 952 | 3.5E-6 | IPR042065 |
| SMART | SM00396 | push_1 | 111 | 180 | 3.1E-22 | IPR003126 |
| ProSiteProfiles | PS51157 | Zinc finger UBR-type profile. | 111 | 181 | 10.511365 | IPR003126 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1268 | 1286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1254 | 1286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1180 | 1197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1216 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02310.1 | proteolysis 6. Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | 0 |
| RefSeq | XP_037404143.1 | E3 ubiquitin-protein ligase PRT6-like [Triticum dicoccoides] | 0 |
| F4KCC2 | E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana OX=3702 GN=PRT6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TSC7 | E3 ubiquitin-protein ligase OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG008660.