Basic Information
Locus ID:
gene:TRIDC3AG005380
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 3A | 24425351 | 24430500 | - | gene:TRIDC3AG005380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 66,533.09 Da | 31.12 | 78.78 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 57 | 357 | 1.01238E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 215 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 235 | 265 | 8.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 580 | 610 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 538 | 567 | 2.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 58 | 88 | 0.0096 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 34 | 357 | 8.7E-48 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 375 | 612 | 5.27E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 344 | 2.0E-183 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 610 | 2.0E-183 | IPR015943 |
| SMART | SM00320 | WD40_4 | 529 | 567 | 5.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 610 | 6.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 178 | 0.058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 524 | 0.0039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 480 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 265 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 93 | 137 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 358 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 579 | 614 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 229 | 9.773251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 492 | 524 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 233 | 267 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 579 | 614 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 267 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 535 | 576 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 98 | 9.372231 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 252 | 266 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18060.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037404001.1 | actin-interacting protein 1-2-like [Triticum dicoccoides] | 0 |
| Q9LV35 | Actin-interacting protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=AIP1-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EAV0 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC3AG005380.