Basic Information
Locus ID:
gene:TRIDC2BG086550
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 779509107 | 779511565 | - | gene:TRIDC2BG086550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 31,608.77 Da | 79.81 | 75.77 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 167 | 214 | 5.9E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 214 | 9.72E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 217 | 3.5E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 171 | 208 | 2.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 171 | 209 | 11.825393 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 186 | 195 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 161 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47160.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037488065.1 | E3 ubiquitin-protein ligase AIRP2-like [Triticum dicoccoides] | 0 |
| Q9M022 | E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CGM3 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG086550.