Basic Information
Locus ID:
gene:TRIDC2BG085830
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 776654401 | 776661139 | + | gene:TRIDC2BG085830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 90,502.37 Da | 58.17 | 67.12 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 502 | 539 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 462 | 497 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 636 | 673 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 377 | 1.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 339 | 677 | 2.44E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 302 | 398 | 5.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 450 | 714 | 1.2E-48 | IPR015943 |
| SMART | SM00320 | WD40_4 | 592 | 632 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 539 | 4.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 633 | 674 | 0.0077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 580 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 1.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 497 | 7.1E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 346 | 383 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 506 | 540 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 387 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 466 | 506 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 466 | 500 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 506 | 540 | 12.480124 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 484 | 498 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 365 | 379 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 484 | 498 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 526 | 540 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 365 | 379 | 1.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 754 | - | - |
| Coils | Coil | Coil | 292 | 312 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037488024.1 | WD repeat-containing protein 44-like [Triticum dicoccoides] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CGM5 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG085830.