Basic Information
Locus ID:
gene:TRIDC2BG084570
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
sorting-associated protein 41-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 768953101 | 768959993 | + | gene:TRIDC2BG084570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 101,731.62 Da | 36.88 | 92.02 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00637 | Region in Clathrin and VPS | 557 | 687 | 3.0E-19 | IPR000547 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 191 | 1.19E-16 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 479 | 774 | 7.6E-10 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 225 | 6.6E-15 | IPR015943 |
| SMART | SM00299 | CLH_2 | 544 | 691 | 2.5E-25 | IPR000547 |
| SMART | SM00320 | WD40_4 | 105 | 141 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 17 | 55 | 0.011 | IPR001680 |
| PIRSF | PIRSF028921 | Vps41 | 1 | 705 | 2.9E-278 | IPR016902 |
| PIRSF | PIRSF028921 | Vps41 | 707 | 874 | 8.7E-37 | IPR016902 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 544 | 691 | 33.725166 | IPR000547 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 894 | - | - |
| Coils | Coil | Coil | 642 | 669 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08190.1 | vacuolar protein sorting 41. Might be involved in protein sorting to the vacuole. | 0 |
| RefSeq | XP_037487955.1 | vacuolar protein sorting-associated protein 41 homolog [Triticum dicoccoides] | 0 |
| P93231 | Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum OX=4081 GN=VPS41 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6CGB7 | Vacuolar protein sorting-associated protein 41 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG084570.