Basic Information
Locus ID:
gene:TRIDC2BG083490
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 764020621 | 764024214 | - | gene:TRIDC2BG083490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 75,818.64 Da | 52.78 | 64.96 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 560 | 610 | 4.0E-10 | IPR002867 |
| Pfam | PF14634 | zinc-RING finger domain | 477 | 526 | 1.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 557 | 615 | 1.73E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 623 | 680 | 1.53E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 471 | 555 | 6.06E-15 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 608 | 684 | 2.0E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 471 | 559 | 8.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 426 | 1.1 | IPR001841 |
| SMART | SM00184 | ring_2 | 234 | 275 | 4.8 | IPR001841 |
| SMART | SM00184 | ring_2 | 42 | 143 | 0.79 | IPR001841 |
| SMART | SM00184 | ring_2 | 477 | 524 | 0.02 | IPR001841 |
| SMART | SM00184 | ring_2 | 640 | 682 | 4.1 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 620 | 682 | 0.049 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 546 | 610 | 9.1E-14 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 473 | 684 | 26.22381 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 477 | 522 | 11.486073 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 159 | 168 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 495 | 504 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 253 | 262 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 347 | 356 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 61 | 70 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037489852.1 | uncharacterized protein LOC119368802 isoform X1 [Triticum dicoccoides] | 0 |
| F4KGU4 | ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6CG01 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG083490.