Basic Information
Locus ID:
gene:TRIDC2BG082440
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
ARP8
Description:
Belongs to the actin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 2B | 759228300 | 759233815 | + | gene:TRIDC2BG082440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 53,951.64 Da | 49.30 | 89.02 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 147 | 283 | 6.05104E-6 | - |
| Pfam | PF00022 | Actin | 193 | 472 | 1.8E-34 | IPR004000 |
| Pfam | PF12937 | F-box-like | 52 | 89 | 2.4E-6 | IPR001810 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 260 | 468 | 5.28E-42 | IPR043129 |
| SUPERFAMILY | SSF81383 | F-box domain | 43 | 100 | 1.83E-11 | IPR036047 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 146 | 266 | 4.53E-13 | IPR043129 |
| Gene3D | G3DSA:3.30.420.40 | - | 190 | 476 | 2.1E-57 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 45 | 90 | 9.4E-8 | - |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 294 | 377 | 2.1E-57 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 251 | 449 | 2.1E-57 | - |
| SMART | SM00256 | fbox_2 | 52 | 92 | 0.0012 | IPR001810 |
| SMART | SM00268 | actin_3 | 144 | 482 | 2.6E-20 | IPR004000 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 46 | 92 | 9.762413 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56180.1 | actin-related protein 8. encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes. | 0 |
| RefSeq | XP_037487834.1 | actin-related protein 8-like isoform X2 [Triticum dicoccoides] | 0 |
| A8WAT2 | Actin-related protein 8 OS=Oryza sativa subsp. indica OX=39946 GN=ARP8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6CFR0 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC2BG082440.